simple	29-Oct-2025 17:25:30	Build FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593) is being prepared for building on agent xindi.openmrs.org, bamboo version: 11.0.2
simple	29-Oct-2025 17:25:30	Remote agent on host xindi.openmrs.org
simple	29-Oct-2025 17:25:30	Build working directory is /data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM
simple	29-Oct-2025 17:25:30	Executing build FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593)
simple	29-Oct-2025 17:25:30	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	29-Oct-2025 17:25:30	Checking out into /data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM
simple	29-Oct-2025 17:25:30	Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce
simple	29-Oct-2025 17:25:30	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:30	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitc4NCredentials992221526746626355.tmp"' ls-remote https://github.com/openmrs/openmrs-module-fhir2
simple	29-Oct-2025 17:25:30	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:30	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:30	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitc4NCredentials992221526746626355.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:30	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:30	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:30	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitc4NCredentials992221526746626355.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	29-Oct-2025 17:25:30	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:30	Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover...
simple	29-Oct-2025 17:25:30	Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'...
simple	29-Oct-2025 17:25:30	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:30	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:30	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitkA7Credentials1770269436912900396.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:30	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:30	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:30	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitkA7Credentials1770269436912900396.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	29-Oct-2025 17:25:30	Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce
simple	29-Oct-2025 17:25:30	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:30	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:30	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:30	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git9XJCredentials1164830590826276645.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:30	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:30	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:30	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git9XJCredentials1164830590826276645.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	29-Oct-2025 17:25:30	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:30	Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover...
simple	29-Oct-2025 17:25:30	Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'...
simple	29-Oct-2025 17:25:30	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:30	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:30	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git9rwCredentials2088725354300677939.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:30	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:30	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:30	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git9rwCredentials2088725354300677939.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	29-Oct-2025 17:25:31	Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce
simple	29-Oct-2025 17:25:31	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:31	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:31	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:31	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git3XsCredentials6690699167183993753.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:31	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:31	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git3XsCredentials6690699167183993753.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
simple	29-Oct-2025 17:25:31	/usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple	29-Oct-2025 17:25:31	Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover...
simple	29-Oct-2025 17:25:31	Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'...
simple	29-Oct-2025 17:25:31	Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'.
simple	29-Oct-2025 17:25:31	/usr/bin/git rev-parse --is-shallow-repository
simple	29-Oct-2025 17:25:31	/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git4mICredentials1839883341460615947.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose
simple	29-Oct-2025 17:25:31	fatal: not a git repository (or any parent up to mount point /)
simple	29-Oct-2025 17:25:31	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31	Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git4mICredentials1839883341460615947.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31	Error occurred while running Task 'Checkout Default Repository(2)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error	29-Oct-2025 17:25:31	java.lang.RuntimeException: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git4mICredentials1839883341460615947.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:
error	29-Oct-2025 17:25:31	fatal: not a git repository (or any parent up to mount point /)
error	29-Oct-2025 17:25:31	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:251)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:223)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:198)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:191)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:160)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:47)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38)
error	29-Oct-2025 17:25:31		at java.base/java.lang.Thread.run(Thread.java:1583)
error	29-Oct-2025 17:25:31	Caused by: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git4mICredentials1839883341460615947.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:
error	29-Oct-2025 17:25:31	fatal: not a git repository (or any parent up to mount point /)
error	29-Oct-2025 17:25:31	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:570)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:534)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:529)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.v2.AbstractGitExecutor.fetchWithRetry(AbstractGitExecutor.java:204)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:275)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:206)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:126)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112)
error	29-Oct-2025 17:25:31		... 20 more
error	29-Oct-2025 17:25:31	Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git4mICredentials1839883341460615947.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok --progress --verbose] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:
error	29-Oct-2025 17:25:31	fatal: not a git repository (or any parent up to mount point /)
error	29-Oct-2025 17:25:31	Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:1052)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runFetchCommand(GitCommandProcessor.java:343)
error	29-Oct-2025 17:25:31		at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:551)
error	29-Oct-2025 17:25:31		... 29 more
error	29-Oct-2025 17:25:31	Failed to prepare the build 'FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593)'
simple	29-Oct-2025 17:25:31	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	29-Oct-2025 17:25:31	Running on server: post build plugin 'NCover Results Collector'
simple	29-Oct-2025 17:25:31	Running on server: post build plugin 'Build Labeller'
simple	29-Oct-2025 17:25:31	Running on server: post build plugin 'Clover Delta Calculator'
simple	29-Oct-2025 17:25:31	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	29-Oct-2025 17:25:31	All post build plugins have finished
simple	29-Oct-2025 17:25:31	Generating build results summary...
simple	29-Oct-2025 17:25:31	Saving build results to disk...
simple	29-Oct-2025 17:25:31	Store variable context...
simple	29-Oct-2025 17:25:31	Finished building FHIR-FM2-RTM-593.