simple 29-Oct-2025 17:24:14 Build FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593) is being prepared for building on agent xindi.openmrs.org, bamboo version: 11.0.2 simple 29-Oct-2025 17:24:14 Remote agent on host xindi.openmrs.org simple 29-Oct-2025 17:24:14 Build working directory is /data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM simple 29-Oct-2025 17:24:14 Executing build FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593) simple 29-Oct-2025 17:24:14 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 29-Oct-2025 17:24:14 Checking out into /data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM simple 29-Oct-2025 17:24:14 Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce simple 29-Oct-2025 17:24:14 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:14 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:14 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:14 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git1YJCredentials7837205829001877337.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 29-Oct-2025 17:24:14 Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover... simple 29-Oct-2025 17:24:14 Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'... simple 29-Oct-2025 17:24:14 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:14 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:14 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:14 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitAguCredentials751476302749803871.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 29-Oct-2025 17:24:14 Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce simple 29-Oct-2025 17:24:14 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:14 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:14 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:14 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitNEgCredentials8617227626992605806.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 29-Oct-2025 17:24:14 Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover... simple 29-Oct-2025 17:24:14 Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'... simple 29-Oct-2025 17:24:14 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:14 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:14 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:14 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitOQvCredentials3517958620713915705.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 29-Oct-2025 17:24:15 Updating source code to revision: 2bb8c432fb3b720868963bb971b07c76e28e62ce simple 29-Oct-2025 17:24:15 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:15 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:15 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/git9kNCredentials6457290873605309103.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). simple 29-Oct-2025 17:24:15 Warning: failed to retrieve source code to working directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM', trying to recover... simple 29-Oct-2025 17:24:15 Cleaned source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'... simple 29-Oct-2025 17:24:15 Fetching 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2'. simple 29-Oct-2025 17:24:15 fatal: not a git repository (or any parent up to mount point /) simple 29-Oct-2025 17:24:15 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitqUMCredentials200397173966745602.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr:fatal: not a git repository (or any parent up to mount point /)Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 Error occurred while running Task 'Checkout Default Repository(2)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout. error 29-Oct-2025 17:24:15 java.lang.RuntimeException: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitqUMCredentials200397173966745602.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr: error 29-Oct-2025 17:24:15 fatal: not a git repository (or any parent up to mount point /) error 29-Oct-2025 17:24:15 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:142) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:208) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:189) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:130) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:323) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:258) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:323) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:97) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:251) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:223) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:198) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:115) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:191) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.lambda$start$0(DefaultBuildAgent.java:160) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:47) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.security.ImpersonationHelper.lambda$makeRunnableWithSystemAuthority$0(ImpersonationHelper.java:38) error 29-Oct-2025 17:24:15 at java.base/java.lang.Thread.run(Thread.java:1583) error 29-Oct-2025 17:24:15 Caused by: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/master' from 'https://github.com/openmrs/openmrs-module-fhir2' to source directory '/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM'. command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitqUMCredentials200397173966745602.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr: error 29-Oct-2025 17:24:15 fatal: not a git repository (or any parent up to mount point /) error 29-Oct-2025 17:24:15 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:570) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:534) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:529) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.v2.AbstractGitExecutor.fetchWithRetry(AbstractGitExecutor.java:204) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:275) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:206) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:126) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:214) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.lambda$execute$0(VcsCheckoutTask.java:131) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112) error 29-Oct-2025 17:24:15 ... 20 more error 29-Oct-2025 17:24:15 Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git -c credential.helper= -c credential.useHttpPath=true -c 'credential.helper=store --file="/tmp/gitqUMCredentials200397173966745602.tmp"' fetch -f -p -P https://github.com/openmrs/openmrs-module-fhir2 +refs/heads/master:refs/heads/master --update-head-ok -q] failed with code 128. Working directory was [/data/bamboo-agent/xml-data/build-dir/FHIR-FM2-RTM]., stderr: error 29-Oct-2025 17:24:15 fatal: not a git repository (or any parent up to mount point /) error 29-Oct-2025 17:24:15 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:1052) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runFetchCommand(GitCommandProcessor.java:343) error 29-Oct-2025 17:24:15 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:551) error 29-Oct-2025 17:24:15 ... 29 more error 29-Oct-2025 17:24:15 Failed to prepare the build 'FHIR - FHIR2 Module - Release to Maven #593 (FHIR-FM2-RTM-593)' simple 29-Oct-2025 17:24:15 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 29-Oct-2025 17:24:15 Running on server: post build plugin 'NCover Results Collector' simple 29-Oct-2025 17:24:15 Running on server: post build plugin 'Build Labeller' simple 29-Oct-2025 17:24:15 Running on server: post build plugin 'Clover Delta Calculator' simple 29-Oct-2025 17:24:15 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 29-Oct-2025 17:24:15 All post build plugins have finished simple 29-Oct-2025 17:24:15 Generating build results summary... simple 29-Oct-2025 17:24:16 Saving build results to disk... simple 29-Oct-2025 17:24:16 Store variable context... simple 29-Oct-2025 17:24:16 Finished building FHIR-FM2-RTM-593.